FastQCFastQC Report
Wed 31 May 2023
EGAF00007930449

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930449
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495198
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42690.8620794106599784No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26180.5286774179217202No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15850.3200739906057779No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13030.26312707240336186No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11040.22294112657967116No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9870.199314213708456No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9180.18538039329722655No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG8660.17487954313224205No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7350.14842547829353106No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7310.14761772058853226No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6640.13408777902980223No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC6500.1312606270623064No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6360.12843347509481057No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6290.12701989911106265No Hit
GATTCCAAAGCCAATGCGTTCAACGCAGCTA5800.11712486722482723No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG5280.10662401705984273No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)