FastQCFastQC Report
Wed 31 May 2023
EGAF00007930453

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930453
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542634
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16850.3105223778826981No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15220.28048371462164184No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9820.1809691246770383No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9810.1807848383993631No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9450.17415053240305622No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9110.16788479896209968No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8890.16383050085324546No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8580.15811762624531453No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7840.14448044169735033No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC7050.1299218257610102No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6920.1275261041512327No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6860.12642038648518153No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT6790.1251303825414552No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6300.1161003549353708No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5650.10412174688648333No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5480.10098888016600509No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5430.10006744877762912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)