FastQCFastQC Report
Sun 21 May 2023
EGAF00007930459

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930459
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430936
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44111.023585868899326No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13100.3039894555107951No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12830.2977240239850001No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8290.1923719531438543No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7970.18494625652068986No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7690.17844877197542094No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6980.1619730075927748No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6030.1399279707427553No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5780.13412664525590806No Hit
TTCGTGGCAAAAGGTGTAGCCGCGGACGCCA5560.1290214788274825No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5530.12832531976906084No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5060.11741882785378803No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4630.1074405480164108No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)