FastQCFastQC Report
Wed 31 May 2023
EGAF00007930468

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930468
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487372
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16800.3447058920085684No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14960.3069523895504871No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT10850.22262255525553376No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10480.21503081834820217No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10220.20969608430521244No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10190.20908053806948287No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9820.20148880116215132No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9410.1930763359405136No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9150.18774160189752387No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8720.17891877251873312No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7740.15881092881823328No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7020.14403781916072322No Hit
CTGGACGGAAACAGAACGACGGCTACGTTTGGAGTGGCGGGTAC7020.14403781916072322No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6720.13788235680342736No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6600.135420171860509No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6590.1352149897819325No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6480.13295798691759067No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6430.13193207652470804No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6410.13152171236755497No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6360.13049580197467234No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6270.12864916326748355No Hit
GTTAGCGGACAGTTCCGCCGCTTTACGTTCCGCTTCCTGACGGT6160.12639216040314175No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6060.12434033961737645No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5780.11859524141723365No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5620.1153123281600092No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5570.11428641776712654No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5390.11059314035274904No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5280.1083361374884072No Hit
TGCGGTTTTGCGTTCGGTTTCGGCTTTCTGTTTGACTGCCAGCT5060.10382213175972359No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG4940.10135994681680523No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)