FastQCFastQC Report
Wed 31 May 2023
EGAF00007930469

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930469
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487372
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38760.7952857365626257No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24810.509056736948368No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15210.3120819415149003No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11460.23513866204870204No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG11250.23082983839859492No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG11210.23000911008428881No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10910.22385364772699295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10240.2101064484623655No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9900.20313025779076355No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9880.20271989363361045No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9580.1965644312763146No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC8720.17891877251873312No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8520.17481513094720255No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7620.15634874387531497No Hit
GAACTGGCTCGCCGTCAACAGGAAGAACGTA7500.1538865589323966No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7170.14711555033937115No Hit
ATGTGCGAAGACACCATCACCTACGAATGTC7110.145884457867912No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7100.14567927578933546No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7010.1438326370821467No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6920.14198599837495793No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6870.1409600879820753No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6810.13972899551061613No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6720.13788235680342736No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6650.13644608225339167No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6530.1339838973104733No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6460.13254762276043763No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6430.13193207652470804No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5900.121057426360152No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5890.12085224428157545No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5770.11839005933865714No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA5700.11695378478862141No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5640.11572269231716224No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA5620.1153123281600092No Hit
GCAGCTGAACTGGCTCACCGTCAAGAAGCTG5590.11469678192427961No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5540.11367087153139696No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4900.10053921850249911No Hit
ACCCGTCAGAAAGCAGAACAGGAGCGTAGCT4890.10033403642392259No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)