FastQCFastQC Report
Sun 21 May 2023
EGAF00007930471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424324
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46181.0883193031739897No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13270.31273272310781386No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7350.17321669290447864No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7180.16921032041553152No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6930.16331859616707986No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC5320.1253758920070512No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5210.1227835333377325No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4380.10322300883287298No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)