FastQCFastQC Report
Sun 21 May 2023
EGAF00007930472

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930472
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489108
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA30460.6227663419939972No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28350.5796265855393901No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG20580.42076596579896464No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG16740.3422556981280208No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13300.271923583339467No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13120.2682434145423915No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG12370.25290937788791024No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10040.2052716373479886No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9290.18993760069350735No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA9140.18687079336261112No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8690.1776703713699224No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC8570.1752169255052054No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8430.17235457199636892No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7980.16315415000368017No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7240.1480245671712587No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7000.1431176754418247No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6990.14291322161976497No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6550.133917253449136No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5700.11653867857405727No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5630.11510750181963902No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5470.11183624066668303No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG4980.10181800338575529No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)