FastQCFastQC Report
Wed 31 May 2023
EGAF00007930473

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930473
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489108
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT75141.5362660189569584No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24440.499685141114028No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC21390.4373267253858043No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19420.3970493224400337No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC17340.3545229274516058No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13610.2782616518233192No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC13020.26619887632179395No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10690.2185611357818723No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9680.1979112997538376No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9400.19218659273616462No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9320.19055096215968662No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9090.18584852425231238No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8440.17255902581842866No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8190.1674476802669349No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7440.1521136436124537No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6780.13861969135651023No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT5900.12062775501525225No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5870.120014393549073No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5720.11694758621817677No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5530.11306296359904153No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5430.11101842537844403No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5430.11101842537844403No Hit
ATGTCTGACGAAGGCCCGGGTACCGGCCCGG5320.10876943333578677No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG5110.10447590307253204No Hit

[OK]Adapter Content

Adapter graph