FastQCFastQC Report
Wed 31 May 2023
EGAF00007930477

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930477
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490360
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23340.4759768333469288No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18660.3805367485112978No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13340.27204502814258913No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12520.2553226201158333No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11970.2441063708295946No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11170.2277918264132474No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9220.18802512439840116No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8720.1778285341381842No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8710.17762460233297986No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7670.15641569459172852No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7660.15621176278652418No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7080.14438371808467249No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6240.12725344644750797No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5540.11297822008320417No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG5170.1054327432906436No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5120.10441308426462192No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5100.10400522065421322No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4920.1003344481605351No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)