FastQCFastQC Report
Wed 31 May 2023
EGAF00007930478

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930478
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471204
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13300.28225566845782296No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11570.24554120932759482No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11550.24511676471337257No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11360.2410845408782608No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10270.21795230940314597No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8490.18017673873736215No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7720.163835621089804No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7690.16319895416847055No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6490.13773227731513316No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6000.12733338426668706No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG5420.11502449045424062No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4870.10335226356312764No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG4830.10250337433468308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)