FastQCFastQC Report
Wed 31 May 2023
EGAF00007930479

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930479
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471204
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47881.0161204064481626No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18730.3974923812191747No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12130.25742565852581895No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12010.2548789908404852No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11630.2468145431702617No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10800.22920009168003666No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8740.1854822964151408No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8730.18527007410802965No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8010.1699900679960272No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7390.1568322849551362No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6770.14367450191424522No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6690.14197672345735604No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6110.12966782964490964No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5190.11014337739068429No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5060.1073844873982394No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG4980.10568670894135024No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4740.10059337357068276No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)