FastQCFastQC Report
Wed 31 May 2023
EGAF00007930487

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930487
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences474400
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45970.9690134907251265No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16780.3537099494097808No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15620.32925801011804384No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11910.2510539629005059No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9690.20425801011804387No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9250.1949831365935919No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9010.18992411467116357No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8880.18718381112984825No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8700.18338954468802698No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8370.17643338954468804No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8340.17580101180438448No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8240.1736930860033727No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7990.16842327150084319No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC7790.16420741989881957No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6910.14565767284991568No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6880.14502529510961212No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6570.13849072512647553No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6300.13279932546374368No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6160.12984822934232715No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6130.12921585160202362No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5860.12352445193929172No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5830.12289207419898819No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5510.11614671163575041No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5470.11530354131534569No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5170.10897976391231029No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5060.10666104553119729No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)