FastQCFastQC Report
Wed 31 May 2023
EGAF00007930490

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930490
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447459
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG10590.23666972839969697No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10050.22460158360877755No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9470.21163950216667896No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8160.1823630768405597No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6530.14593515830500672No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6530.14593515830500672No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6390.14280638002587945No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6300.14079502256072624No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5650.126268551979064No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4630.10347316737399405No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)