FastQCFastQC Report
Sun 21 May 2023
EGAF00007930492

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930492
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473769
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG11730.24758901489966628No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10140.21402835559101588No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG10120.21360620893304544No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT8470.1787791096504837No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7230.15260601685631606No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7140.15070635689544903No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7070.14922884359255248No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6140.12959902399692677No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5670.11967857753462129No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5350.11292423100709417No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)