FastQCFastQC Report
Sun 21 May 2023
EGAF00007930495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450959
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37220.8253521938801531No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26890.5962848063792939No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25320.5614701114735485No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG17280.3831833936122796No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15420.34193795888318007No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14650.3248632359039292No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14320.3175454974842502No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13640.30246652134672997No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10970.24325936504205484No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC10870.24104186855124304No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10630.23571987697329472No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9540.21154916522344602No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6950.15411600611142032No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6860.15212025926968972No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6700.14857226488439082No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6400.1419197754119554No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6350.14081102716654953No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6320.14014577821930596No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6220.13792828172849417No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5920.13127579225605876No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5390.1195230608547562No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4530.10045259103377469No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)