FastQCFastQC Report
Wed 31 May 2023
EGAF00007930498

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930498
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450569
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26810.5950254012149082No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25600.568170468895996No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24790.5501932001535836No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21260.4718478190909717No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA20080.4456587115402968No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19560.4341177488908469No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16150.35843566690118495No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15930.35355295193411No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15390.34156810610583505No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14220.31560094014457274No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11140.24724293060552324No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10360.22993148663134835No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8740.1939769491465236No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8740.1939769491465236No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8700.19308918278887363No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8580.19042588371592364No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA8420.18687481828532365No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8280.18376763603354868No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7570.1680097831852613No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC7360.16334900980759884No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6990.1551371709993364No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6410.1422645588134115No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6270.13915737656163651No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT5420.12029234146157415No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC5390.11962651669333664No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5120.11363409377919918No Hit
CGGCTGACCGTCATCTGCTACATTGGTACAGACGCGTGCGCCGT5030.1116366194744867No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4950.10986108675918671No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT4860.10786361245447423No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4860.10786361245447423No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4830.10719778768623675No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4730.10497837179211177No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4720.10475643020269926No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4690.10409060543446176No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)