FastQCFastQC Report
Sun 21 May 2023
EGAF00007930499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450569
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT65361.4506102284000897No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG37180.8251788294356691No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC37140.8242910630780191No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA22590.5013660504828339No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG21940.48693984717102157No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20210.4485439522026593No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17850.39616573710130965No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC16840.3737496365706473No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15900.3528871271658725No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15160.3364634495493476No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG14340.3182642392175227No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11070.24568933947963575No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10180.22593653802192337No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9760.21661499126659844No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9200.20418626225949854No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9070.20130102159713606No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8820.19575248186182362No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG8590.19064782530533614No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7760.17222667338409878No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7300.16201736027112384No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6370.14137679245576149No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6230.1382696102039865No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6090.13516242795221153No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5560.12339952371334911No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5390.11962651669333664No Hit
CGTGAAACCCTGGCTAAACTGGGCGTGTCTG5280.11718515920979918No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4960.11008302834859922No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4940.10963914516977422No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4920.10919526199094923No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4880.10830749563329922No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4870.10808555404388671No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4750.10542225497093675No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4680.10386866384504925No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT4580.10164924795092428No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG4510.1000956568250368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)