FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930504

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930504
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences463562
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG19200.4141840789365824No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14420.31106950095132907No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14240.3071865252112986No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG13430.28971313438116153No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13410.28928169263226927No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12770.2754755566677165No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12160.2623165833265022No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10220.22046673368395167No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7350.15855484271791043No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7060.15229893735897246No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG6520.1406500101388811No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6270.1352569882777277No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6150.13266833778437404No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG5730.1236080610576363No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG5260.11346917995866787No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5250.11325345908422176No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT5220.11260629646088333No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)