FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930507

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930507
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences514253
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT60421.1749080705411539No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC35030.6811822196467497No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25670.4991706416880407No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22500.43752783163151215No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20310.3949417893527116No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19740.38385775095138No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19020.3698568603391716No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16890.32843755894472176No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13770.2677670329584854No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13150.25571071048686156No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12610.24521004252770523No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10190.19815149352556036No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9910.19270670273192378No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9730.18920648007887167No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9230.1794836393759492No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8970.1744277622104295No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8380.16295481018098096No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8030.1561488216889352No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7960.15478762399052606No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7500.14584261054383738No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6900.13417520170033037No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6570.12775812683640153No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6260.12172996560058959No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6230.12114659515841425No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5610.10909027268679035No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5530.10753461817432275No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5430.10559005003373827No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5380.104617765963446No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5330.10364548189315376No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5290.10286765463691995No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5280.1026731978228615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)