FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences488950
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT57181.1694447284998466No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40980.838122507413846No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32980.6745065957664382No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25430.5200940791491973No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20990.429287248184886No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA17900.36609060231107476No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17690.3617956846303303No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG17550.3589324061765007No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG15230.3114837917987524No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12700.2597402597402597No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12140.24828714592494122No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11840.2421515492381634No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9610.1965436138664485No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9430.19286225585438185No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT8670.1773187442478781No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8340.17056958789242255No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7790.15932099396666327No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7520.15379895694856324No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6820.13948256467941508No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6740.137846405562941No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6730.13764188567338173No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG6120.1251661724102669No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5960.12189385417731874No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5760.11780345638613356No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5590.11432661826362614No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG5560.11371305859494837No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5250.10737294201861132No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5080.1038961038961039No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5030.10287350444830759No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)