FastQCFastQC Report
Sun 21 May 2023
EGAF00007930510

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930510
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486404
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT11200.2302612642988133No Hit
ACGACGAGAACGGCGAGAGCCTGCGGACTCACCCTGACCGGACT10490.215664344865585No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10490.215664344865585No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9860.20271214874877674No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT9650.19839475004317397No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT9520.19572207465399133No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT8930.18359224019539314No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8600.17680775651516023No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6400.1315778653136076No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT6360.13075550365539756No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6340.13034432282629255No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5980.12294306790240211No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5700.11718653629493178No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5580.11471945132030163No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5540.1138970896620916No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5540.1138970896620916No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG5460.1122523663456715No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5220.10731819639641121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)