FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930511

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930511
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486404
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA12820.2635669114563202No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10980.22573827517865805No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT10780.22162646688760781No Hit
GGCCGCTCCGACGCGTCCCATGGCCAGTCTG10470.21525316403647995No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10420.2142252119637174No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT10140.20846868035624705No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9950.20456246247974935No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9840.20230096791967173No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9720.19983388294504156No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA9010.18523696351181324No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8450.17372390029687254No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6870.1412406147975757No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6820.14021266272481311No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC6400.1315778653136076No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC6350.13054991324084506No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA6310.129727551582635No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6260.12869959950987245No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5940.12212070624419208No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5600.11513063214940665No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5410.11122441427290895No Hit

[OK]Adapter Content

Adapter graph