FastQCFastQC Report
Wed 31 May 2023
EGAF00007930513

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930513
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414836
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34540.8326181912852307No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27370.6597788041539308No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26560.6402530156495578No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14820.3572496118948211No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14250.3435092422065587No Hit
ATGTCCAACATGGACATCGATGGTATTAACA12550.3025291922591096No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12540.30228813314177166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12030.28999411815753695No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9170.22105121059888727No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA8650.20851613649731462No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7890.19019564357963145No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC6920.1668129091978517No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6380.15379571686160315No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5920.1427069974640581No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5560.13402886923989238No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTG4740.11426202161818164No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4730.1140209625008437No Hit
GCACTGGTAAGCGCTATGGAACGTACTGAAC4720.11377990338350577No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4560.10992295750609879No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG4520.10895872103674706No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4470.10775342545005738No Hit
CGCGAAATGATCCGTTATATGGCACTGGTTT4310.10389647957265039No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4270.10293224310329865No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4240.10220906575128484No Hit

[OK]Adapter Content

Adapter graph