FastQCFastQC Report
Wed 31 May 2023
EGAF00007930514

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930514
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451290
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18440.4086064393183984No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13170.2918300870836934No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11020.24418888076403197No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10320.22867779033437477No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8800.19499656540140486No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT7310.1619801014868488No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT6850.15178709920450265No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6750.14957122914312304No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5810.12874205056615481No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5800.12852046356001684No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5530.12253761439429192No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5430.12032174433291232No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5220.11566841720401515No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4790.10614017594008288No Hit
ACCCAGGGTGATGGAGCGAACACGGTCGCTGTAGCCGCATTCTT4720.10458906689711715No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4640.10281637084801347No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4560.1010436747989098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)