FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930516

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930516
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484922
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14420.2973674116662061No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT7970.16435632947154388No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT6070.12517477037544184No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5410.11156433405784848No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA5030.10372802223862806No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4890.1008409599894416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)