FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930522

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930522
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437843
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA26390.6027274616700506No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA24260.5540798870828127No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14260.32568751812864427No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7300.16672642933654302No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6870.15690555747151377No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6370.14548593902380536No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC6090.1390909526930886No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5750.1313256121486469No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5330.1217331326525718No Hit
GCACCAGGAGATGCGGGTCAGTTCCGGCTGACGCCATTCCTCCA5190.11853563948721346No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG4830.11031351420486338No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4570.10437531261205502No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)