FastQCFastQC Report
Wed 31 May 2023
EGAF00007930523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437843
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT60871.3902243498240237No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14600.33345285867308605No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA13320.30421863544695243No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9860.22519487578881014No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8070.18431264174601397No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7740.17677569357052642No Hit
CTGCGTGCCGAAGCTAAATTCTACCAGGGTA6210.14183166112053863No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6090.1390909526930886No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5950.13589345952773024No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5660.12927008082805935No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4880.11145547604963424No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4390.10026424997087997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)