FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415883
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA24560.590550707771176No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA22960.5520783489587215No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13980.33615223512382086No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6890.16567159513613205No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6400.15388943524981785No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6290.1512444605814616No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5700.13705777826936902No Hit
GCACCAGGAGATGCGGGTCAGTTCCGGCTGACGCCATTCCTCCA5690.1368173260267912No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC5530.13297009014554576No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5500.13224873341781224No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4250.10219220309558216No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4220.10147084636784864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)