FastQCFastQC Report
Sun 21 May 2023
EGAF00007930525

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930525
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415883
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT56861.3672114512976004No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35850.8620212896415579No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13630.32773640663359643No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA12720.305855252559013No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8850.21280023468138876No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7530.18106053866111382No Hit
CTGCGTGCCGAAGCTAAATTCTACCAGGGTA6390.15364898300724003No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5850.14066456190803664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5780.13898139620999175No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5050.1214283825018094No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)