FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429675
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA45081.0491650666201198No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT44201.0286844708209695No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT27370.6369930761622156No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20620.4798975970210042No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18680.43474719264560424No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA17400.4049572351195671No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC15800.3677197882120207No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15660.3644615116076104No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG13680.3183801710595217No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG12700.2955722348286496No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC8710.20271135160295572No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8080.18804910688310933No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7940.18479083027869903No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6840.15919008552976086No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5860.1363821492988887No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5830.13568394716937218No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC4700.10938500029091755No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4660.10845406411822889No Hit
ACGGCAGCGACTTCCAAAGCCGTTGCTGCCA4450.10356664921161343No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4370.10170477686623611No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4310.10030837260720311No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)