FastQCFastQC Report
Sun 21 May 2023
EGAF00007930531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences393474
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34040.8651143404646813No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21110.5365030472153179No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC18980.48236986433665247No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG15960.40561765199225364No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG15420.3918937464737187No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA14240.3619044714517351No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12820.3258156828659581No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11780.29938445742285386No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11370.28896445508470703No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10160.25821274086724916No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8960.22771517304828273No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8060.2048419971840579No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6650.16900735499677233No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5890.14969222871142693No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5790.14715076472651306No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5700.14486344714009058No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT5560.14130539756121116No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT5390.13698490878685757No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5030.12783563844116766No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4750.12071953928340881No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA4460.11334929372715859No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4420.11233270813319304No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4120.10470831617845143No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4070.1034375841859945No Hit

[OK]Adapter Content

Adapter graph