FastQCFastQC Report
Wed 31 May 2023
EGAF00007930534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409873
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13930.33986137169318303No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11840.2888699670385705No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5810.1417512253795688No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5750.1402873573033598No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5420.1322360828842105No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5310.12955232474449402No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5200.12686856660477758No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4260.10393463341083702No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4120.10051894123301608No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)