FastQCFastQC Report
Wed 31 May 2023
EGAF00007930535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences409873
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31150.759991509565158No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7610.18566726766583794No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7060.1722484769672557No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6740.16444118056080786No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6060.14785067569710617No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5990.1461428296081957No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5410.13199210487150898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5320.12979630275719553No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5290.12906436871909102No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4630.11296181988079235No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4390.10710634757595645No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG4100.10003098520761308No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)