FastQCFastQC Report
Sun 21 May 2023
EGAF00007930540

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930540
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384060
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC14380.3744206634380045No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14250.3710357756600531No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12220.318179451127428No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11230.2924022288184138No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7500.19528198718950165No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7330.19085559547987294No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5860.15258032599073063No Hit
GTAAGACAGCACCTGGCCCGGATAGATCAGGTTGGCGTTGGAGA4640.12081445607457167No Hit
CGGACCAGGATCCGGACCGTCGTCGCCCATCTGATCCGGTTCCG4570.11899182419413633No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4170.10857678487736291No Hit
CAGCAGTGCGCCGTTACGTTTGAAGACATCGTCTTCTTCTTCGC4100.10675415299692757No Hit
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT4030.10493152111649222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)