FastQCFastQC Report
Wed 31 May 2023
EGAF00007930541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384060
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28950.7537884705514764No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG14450.3762432953184398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14410.37520179138676246No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8040.20934229026714576No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7820.20361401864292036No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6780.1765349164193095No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5910.15388220590532728No Hit
AAAATTTCCGGCAGCCAGGCATCCTCCCACA4940.12862573556215176No Hit
CAGGCGCCGTACCCGTCTGAGGACTCCCCGA4840.1260219757329584No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4670.12159558402332969No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA4590.119512576159975No Hit
GCAGTTGCGCCGGAACCAGTAGCACCGGCTC4200.10935791282612092No Hit
GCGAAAAACACCACTATCGCACTGCAGGCTG4190.10909753684320159No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG4140.1077956569286049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)