FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397771
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16640.41833115033524315No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14150.3557323183439718No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12460.31324556088804867No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9380.235814073926958No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9020.22676364038605126No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8220.20665156585070302No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7510.18880209970058148No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7480.18804789690550594No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7100.17849466150121554No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6640.1669302186433903No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5990.15058915808341986No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4840.12167805093885678No Hit
ACGAACGTTAACAGCACGTGGGCGGTTCGGGTCACGGCGCAGAT3980.10005757081335745No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)