FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397771
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG34350.8635622003615145No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33550.8434501258261663No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18550.466348728288387No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14910.3748387891525526No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12710.31953058418034497No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA12350.31048015063943823No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC9650.242601899082638No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7540.18955630249565705No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6820.17145543541384364No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6150.1546115729904895No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGC4130.10382858478873522No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4070.1023201791985841No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)