FastQCFastQC Report
Sun 21 May 2023
EGAF00007930544

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930544
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422694
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT17130.4052577041547786No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14980.3543934855947802No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12610.2983245562984097No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10660.2521918929532948No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9480.2242757171854817No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG9390.22214651733878407No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8470.2003813633503196No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8080.19115483068129663No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7430.175777276232925No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6970.16489469923869277No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6750.15968998850232083No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC4910.11615968052539188No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4690.11095496978901995No Hit
ACGAACGTTAACAGCACGTGGGCGGTTCGGGTCACGGCGCAGAT4360.10314790368446206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)