FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930545

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930545
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422694
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35530.840560783924068No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT21550.5098250744037057No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15740.37237339541133774No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14220.3364135757782225No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12890.30494873359924674No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10330.2443848268487369No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8790.20795185169413333No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8040.19020851963831992No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7300.17270176534325066No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6340.1499903003118095No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5020.11876203589357785No Hit
CGTGCATCCGTCACTTCTCGCGGCTACCCGC4570.10811603666008981No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4420.10456737024892712No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4400.10409421472743875No Hit
ATGTCCAACATGGACATCGATGGTATTAACA4390.10385763696669457No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4300.10172843711999696No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)