FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences405946
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT54781.3494405659866089No Hit
TACGACGACTTCCATACCGATGAAGATAAAC15230.375173052573495No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT13200.32516640144255643No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC9890.24362846289900628No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG8600.21185083730348372No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA8380.2064313972794411No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7690.1894340626585802No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG7450.18352194626871554No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6970.17169771348898621No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG6590.16233686253836718No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5950.1465712188320614No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5940.1463248806491504No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5750.14164445517384086No Hit
GCTAAAACCGCAGATACCCCGGCGACCTCTA5720.1409054406251078No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5560.13696402969853133No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4850.11947401871184839No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4300.10592541865174186No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4220.10395471318845363No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)