FastQCFastQC Report
Sun 21 May 2023
EGAF00007930548

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930548
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383939
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21330.5555570025446751No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20050.5222183732311644No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG12620.32869804838789496No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12350.3216656812670763No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8200.21357559403967818No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6820.1776323843110494No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG6580.17138139131476615No Hit
CGCATCAATAACAGCTACAACGGTACCAGCGCCTTTACCTGCCT6020.15679574099010518No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC5930.15445161861649898No Hit
GCTCTGGTAGCGTGCTTTGGTCTTATCAGTCAGACGCCAGGCTT5330.13882413612579084No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5310.1383032200427672No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT5180.13491726550311375No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5160.13439634942009016No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5160.13439634942009016No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA4850.1263221501332243No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT4160.10835054526890991No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4070.10600642289530368No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)