FastQCFastQC Report
Sun 21 May 2023
EGAF00007930549

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930549
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383939
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT51851.3504749452386968No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG33240.8657625299852321No Hit
TACGACGACTTCCATACCGATGAAGATAAAC13870.3612553035768703No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT12260.3193215588934701No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8700.2265984961152683No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG7740.20159452413013526No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA7400.19273895071873398No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6850.1784137584355848No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG6480.16877681089964813No Hit
GCTAAAACCGCAGATACCCCGGCGACCTCTA6010.1565352829485934No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5710.1487215417032393No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5550.14455421303905047No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5480.14273100674846786No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT5380.14012642633334985No Hit
GAGAGCTCTCGTAAAGCGTACGATCACAACT5330.13882413612579084No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4560.11876886692938202No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG4220.10991329351798071No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG3900.10157863618960304No Hit
ATGTCCAACATGGACATCGATGGTATTAACA3860.10053680402355583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)