FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007930551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383825
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT47801.2453592131830913No Hit
ATCGAAGTGATTGACGTTGAAACCACTGAAG23860.6216374649905556No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19560.509607242884127No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19540.5090861720836319No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16500.42988341040838923No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11520.3001367810851299No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11280.29388393147918973No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10350.26965413925617143No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10320.2688725330554289No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10270.26756985605419137No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7630.19878851038884907No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7620.19852797498860156No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7570.19722529798736405No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC7370.19201458998241386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7310.1904513775809288No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7070.1841985279749886No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6870.17898781997003843No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6730.17534032436657332No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6540.17039015176187064No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6120.15944766495147528No Hit
ATGGCACGTCGCCTGCCGAAACCGACTCTGC6070.15814498795023774No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5030.13104930632449682No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4900.12766234612127922No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4820.12557806291929915No Hit
AACCGTGACCCGGTGGAAGCAGCTAACCCGT4470.11645932391063636No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4400.11463557610890379No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4400.11463557610890379No Hit
ATTGAAGTTATCGACGTTGAAACCACTGAAG4340.11307236370741874No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4330.11281182830717124No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4260.11098808050543868No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA4190.10916433270370611No Hit
GGTCCGGGCATTAACCCAATCAGCAAAACCG4160.10838272650296359No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4060.1057773725004885No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC3900.10160880609652836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)