FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930555

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930555
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425990
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG36870.865513274959506No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24110.5659757271297449No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15760.36996173619099043No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13580.31878682598183056No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10510.2467194065588394No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10170.23873799854456676No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9770.22934810676306958No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG9330.2190192258034226No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG8950.21009882861100027No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8320.19530974905514212No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7960.18685884645179465No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA7760.18216390056104603No Hit
CTGATGCGTATGAAGGAAGTATCTAGCGTTT7670.18005117491020917No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGG7200.16901805206694995No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6910.16221038052536446No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6670.15657644545646612No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6610.15516796168924152No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6000.14084837672245828No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5880.1380314091880091No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5860.13756191459893424No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5430.12746778093382474No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5390.12652879175567502No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4990.11713889997417781No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4630.1086879973708303No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCC4390.10305406230193197No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)