FastQCFastQC Report
Wed 31 May 2023
EGAF00007930559

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930559
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences432419
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA16660.3852744675881494No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15300.3538234906421781No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10700.24744518626609838No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10310.23842615611247425No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8620.19934369211343628No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8300.19194346224379594No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7950.18384946082387685No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7870.18199940335646678No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7780.17991808870563042No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7740.17899305997192538No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG7380.17066780136858No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7230.1671989436171861No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC6140.14199191062372374No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6010.13898556723918237No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5630.13019779426898448No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5510.12742270806786934No Hit
TTCGTCGAACTGATGCAGCCGCTGAAACGTT5000.1156285917131301No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4340.10036561760699693No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)