FastQCFastQC Report
Wed 8 May 2024
EGAF00007930560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408419
Total Bases17.9 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11430.2798596539338278No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9050.22158616518820132No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8960.21938254586588773No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8130.19906027878232893No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7030.17212715373182932No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6950.17016838100088388No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC6850.1677199150872021No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6630.16233329007710218No Hit
ACCCGGGTCACCCTTATCGCCTTTGTCGCCTTTCGCGCCTACCA6150.15058065369142964No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6120.1498461139173251No Hit
GGAAAAGCCGAAGCGACGCAGCGCACGAGTGTCTGCGGTTACAC5430.1329516991129208No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5050.12364752864093002No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4930.12070936954451188No Hit
CAGGGAGGAAGAAGTCACAGAGGCGTTGCAGCGATAGAACATGC4880.119485136587671No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC4590.11238458543799382No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)