FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007930561

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930561
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences408419
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG35910.8792441096031282No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15550.3807364495775172No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14910.36506626772995376No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9960.24386720500270556No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9160.2242794776932513No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8630.21130260835073786No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7720.18902156853623364No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7480.18314525034339735No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7010.17163746054909296No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6900.168944148044043No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6590.16135390371162947No Hit
GTGAGCGATGCCGTCGCTAACGGCCTGAAGG6470.15841574461521135No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5920.14494918208996155No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5510.13491047184386623No Hit
GAAGAGCTGTCCAACGAAGTTCTGCCACCGC5450.13344139229565716No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5350.13099292638197535No Hit
TTCGTCGAACTGATGCAGCCGCTGAAACGTT4900.11997482977040734No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4690.11483305135167561No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4110.10063194905232126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)