FastQCFastQC Report
Sun 21 May 2023
EGAF00007930571

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930571
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498685
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG28720.575914655544081No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27550.5524529512618186No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA22320.44757712784623566No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC12850.25767769233083004No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11790.23642178930587446No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11640.23341387850045622No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC10400.20854848250899866No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10350.20754584557385924No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10070.20193107873707852No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8870.1778677922937325No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7510.15059606765794037No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC7340.1471871020784664No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6980.1399681161454626No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6710.1345538766957097No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG6300.1263322538275665No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5780.11590482970211657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)