FastQCFastQC Report
Sun 21 May 2023
EGAF00007930573

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930573
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465859
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65911.414805767410311No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25650.5505957811269075No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA20110.4316756786924799No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC11500.24685580830251216No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10820.2322591170289723No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT10800.2318298025797505No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9920.21293996681399308No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9330.20027519056195114No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8850.18997164378062892No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8320.17859481087625226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7780.16700332074726473No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6880.14768417053228552No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC6660.14296171159084617No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6180.13265816480952392No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG5910.12686241974503015No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5020.10775792675466182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)