FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007930579

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007930579
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences505270
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT46370.9177271557780988No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA36900.7303026104854831No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG31140.6163041542145783No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15440.30557919528173055No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15330.3034021414293348No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14180.28064203297247015No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7800.15437290953351673No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6560.1298315751974192No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5970.11815464998911472No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA5620.11122766045876462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)